Notes

All contents are under CC BY 4.0 unless specified. Mostly, under construction. When you find something wrong or inappropriate, please let me know.

Table Of Contents

Biomolecular modelling and analysis

Molecular Dynamics Simulation

• Dataset: Molecular dynamics trajectories of protein folding (Educational purposes)

In the dataset, the following movie is given:

PyMOL

• Generate a linear amino-acid sequence

• Relative SASA calculation by PyMOL

UCSF Chimera

• An easy way to model missing loop of a protein